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Image data

  • 3D T2 Cervical MR (0.625 x 0.625 x 4.5 mm)

More details about the data are described in [1].


Inter patient registration of cervical images.

Registration settings

elastix version: 4.5

In this work the StatisticalShapePenalty module is introduced in elastix. In order to use this as a metric you need to build elastix from source with the cmake option StatisticalShapePenalty selected.

Parameter files:

This zip file contains the parameter files used in [1].

An additional script is used to generate the model from a training set. The python script together with an example training set is provided.

Known issues

Published in

The method and experiments are published in:

[1] F.F. Berendsen et al., Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR, Comput. Vis. Image Understand. (2013),

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